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PUBLICATIONS

Linker histone H1 functions as a liquid-like glue to organize chromatin in living human cells

Kazuhiro Maeshima Masa A Shimazoe, Charles Phillips, Jan Huertas, Satoru Ide, Sachiko Tamura, Stephen Farr, S. S. Ashwin, Masaki Sasai, Rosana Collepardo-Guevara

​bioarxiv doi: https://doi.org/10.1101/2025.03.05.641622

 

Closed form Eigenvalues of Randomly Segmented Tridiagonal quasi-Toeplitz Matrices: Random Rouse block copolymer

S.S. Ashwin

Physical Review E 111, 064416 (2025)

 

Criticality in Alzheimer’s and healthy brains: insights from phase-ordering

Anirudh Palutla, Shivansh Seth, S.S Ashwin, Marimuthu Krishnan

Cognitive Neurodynamics ,Volume 18, pages 1789–1797, (2024)

 

Heterogeneous fluid movements of chromatin in living cells and their responses to perturbations.
S.S. Ashwin, Kazuhiro Maeshima, Masaki Sasai
Biophysical Reviews, (invited) 12, 461-468, (2020).

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A kinetically constrained model with a thermodynamic flavor.
S.S. Ashwin
arxiv:1909.08277, (under consideration).

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Organization of fast and slow chromatin revealed by single-nucleosome dynamics.
S.S. Ashwin, Tadasu Nozaki, Kazuhiro Maeshima, Masaki Sasai
Proc. Natl. Acad. Sci. USA 116:19939, (2019).

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Single nucleosome imaging reveals loose genome chromatin network via active

RNA polymerase II.
Kazuhiro Maeshima Ryosuke Nagashima, Kayo Hibino, S.S. Ashwin, Michael Babokhov,
Shin Fujishiro, Ryosuke Imai, Tadasu Nozaki, Sachiko Tamura, Tomomi Tani, Hiroshi Kimura,
Michael Shribak, Masato T. Kanemaki, Masaki Sasai

Journal of Cell Biology 218(5), 1511 (2019).
Spotlight: Journal of Cell Biology 218(5), 1427 (2019).
Active RNA polymerase II curbs chromatin movement.
Hodaya Hochberg-Laufer, Yaron Shav-Tal

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Effects of collective histone state dynamics on epigenetic landscape and kinetics
of cell reprogramming
.
S.S. Ashwin, Masaki Sasai
Scientific Reports 5, 16746 (2015).

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Inherent structures, fragility, and jamming: Insights from quasi-one-dimensional
hard disks.

Mahdi Zaeifi Yamchi, S.S. Ashwin, Richard K Bowles
Physical Review E 91(2), 022301 (2015).

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Inherent structure landscape connection between liquids, granular materials, and
the jamming phase diagram.

S.S. Ashwin , Mahdi Zaeifi Yamchi, Richard K Bowles
Physical Review Letters, 110, 225701 (2013).

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Fragile-strong fluid crossover and universal relaxation times in a confined hard-
disk fluid.

Mahdi Zaeifi Yamchi, S.S. Ashwin , Richard K Bowles
Physical Review Letters, 109, 225701 (2012).

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Calculations of the structure of basin volumes for mechanically Stable Packings.
S.S. Ashwin, Jerzy Blawzdziewicz, Corey O’Hern, Mark D Shattuck

Physical Review E, 85, 061307, (2012).

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Edwards entropy and compactivity in an exact model of granular matter.
Richard K Bowles and S.S. Ashwin
Physical Review E, 83, 031302, (2011).

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The complete jamming landscape of confined hard discs.
S.S. Ashwin , Richard K Bowles
Physical Review Letters, 102, 235701 (2009).

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A tiling approach to counting inherent structures in hard potential systems.
S.S. Ashwin , Richard K Bowles
Journal of Non-Crystalline Solids, 355, 700, (2009).

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Gaussian approximation to single particle correlations at and below the picosec-
ond scale for Lennard-Jones and nanoparticle fluids.

R. van Zon, S.S. Ashwin, E.G.D. Cohen
Nonlinearity, 21, R119 (2008).

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Short-time fluctuations of displacements and work.
R. van Zon, S.S. Ashwin, E.G.D. Cohen
Comptes Rendus Physique, 8 (5-6), 633 (2007).

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The glass transition and liquid-gas spinodal boundaries of metastable liquids.
S.S. Ashwin, Gautam I. Menon, Srikanth Sastry
Europhysics Letters, 75 (6), 922, (2006).

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The relationship between mechanical and dynamical properties of glass forming
liquids.

S.S. Ashwin, Y. Brumer, D. R. Reichman and Srikanth Sastry
Journal of Physical Chemistry B, 108, 19703-19710, (2004).

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Metal-to-semimetal transition in supercooled liquid silicon.
S.S. Ashwin, U. V. Waghmare, and Srikanth Sastry
Physical Review Letters, 92, 175701, (2004).

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Low temperature behaviour of the Kob-Andersen binary mixture.
Ashwin S.S and Srikanth Sastry
Journal of Physics: Condens. Matter,15, S1253 (2003).

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